Files in lixiangchun/lxctk
Li Xiangchun's tool-kit (lxctk)

DESCRIPTION
NAMESPACE
R/.Rapp.history
R/.Rhistory
R/AlexandrovEtAl_signatures_corr.R R/BayesNMF.signature_discovery.R R/COSMIC_signatures_corr.R R/DBDA2E-utilities.R R/DbdaDensPlot2.R R/DoISVA.v2.R R/MutationRelation.pm.R R/RunMEGSA.R R/absCNSeq.R R/bayes.student_t.R R/bayes.t.test.R R/bayes.t.test.model.R R/beanplot.R R/beanplot2.R R/beanplotbeanlines.R R/beanplotinnerborders.R R/beanplotpolyshapes.R R/beanplotscatters.R R/best.model_codes.R R/best.model_functions.R R/best.robust_t_test_batch.R R/boxplot.jitter.R R/calc_allelic_freqs.R R/cmds_lib.R R/combine.test.R R/diag.mcmc.R R/dist.JSD.R R/dudi.acm.R R/fixcolorvector.R R/get.mutland.R R/getgroupsfromarguments.R R/ggPlotMutationalSignatures.R R/ggboxplot.R R/ggforestplot.R R/glmfit.R R/landscape.data.R R/legoplot.R R/lm2.R R/makecombinedname.R R/mshapiro.test.R R/mutsig.gene.R R/mutsig.pathway.R R/mutsigcl-v1.0.R R/mutsigcl.R R/mutsigcl2.R R/mutsigcl_global.R R/mutsigclfn.R R/mutsigcv.sig.pathway.R R/mutsignr.R R/oncoprinter.R R/optimcluster.R R/pileup_freqs.R R/plot.96.spectra.R R/plot.CoocurExclus.R R/plot.MH.R R/plot.SciClone.R R/plot.coocur.R R/plot.coocur2.R R/plot.coxph.R R/plot.depth.R R/plot.land.R R/plot.landscape2.R R/plot.logit.R R/plot.multinom.R R/plot.mutation.signature.R R/plot.mutational.exposures.R R/plot.mutational.processes.R R/plot.spectra.R R/plot.surv.curve.R R/plot.survfit.lixc.R R/plotMutationalProcesses.R R/rank.based.INT.R R/run.cn.farms.from.Celfiles.R R/runRF.R R/s.class2.R R/seemslog.R R/sortDataFrame.R R/unicoxph.R R/vioplot.R R/vioplot2.R R/which.xy.R README.md
data/AlexandrovEtAl_signatures.RData
data/BreastCancerRelatedGenes.RData
data/BreastCancerRelatedGenes.txt
data/CGC20140319.RData
data/COSMIC_signatures.RData
data/CRCMutMat.RData
data/CancerDB.RData
data/CancerGeneCensus.RData
data/CancerRelatedGenes.RData
data/CanonicalCancerPathway.RData
data/ChromatinRegulatoryGenes.RData
data/LandscapeColor.RData
data/LixcCuratedPathway.RData
data/MH.RData
data/OncogenicSignatureGeneSet.RData
data/PathwayDB.RData
data/Rank_eq_9.exposures.txt
data/Rank_eq_9.processes.txt
data/RegularMutatedGC.RData
data/SLC12A7_tumor_expression.RData
data/SMG.RData
data/TARGET_db.RData
data/TwoGroupIQ.RData
data/absCNseq.RData
data/bayes.t.test.model.RData
data/bayes.t.test.model.txt
data/ccds.depth.RData
data/cds_start_3k_upstream.RData
data/cmds.RData
data/contexts.txt
data/crcdat.RData
data/ggboxplot_data.RData
data/icgc.hcc.RData
data/muSpec.RData
data/nature12912_260_Smg.RData
data/plot.coocur2.test.RData
data/plot.coxph.RData
data/plot.mutation.signature.ex.RData
data/refgene.RData
data/runRF.RData
data/simdataISVA.RData
data/spectra.96.RData
data/stad_regular_GC_originalGenomes.txt
data/x.RData
man/.Rapp.history
man/:q
man/AlexandrovEtAl_signatures_corr.Rd man/BayesNMF.MutationalSignatures.Rd man/BreastCancerRelatedGenes.Rd man/COSMIC_signatures_corr.Rd man/CancerDB.Rd man/CancerGeneCensus.Rd man/CancerRelatedGenes.Rd man/ChromatinRegulatoryGenes.Rd man/DbdaDensPlot2.Rd man/DoISVA.v2.Rd man/HDIofMCMC.stanfit.Rd man/LandscapeColor.Rd man/LixcCuratedPathway.Rd man/OncogenicSignatureGeneSet.Rd man/PathwayDB.Rd man/RegularMutatedGC.Rd man/RunMEGSA.Rd man/TARGET_db.Rd man/bayes.student_t.Rd man/bayes.t.test.Rd man/beanplot.Rd man/beanplot2.Rd man/best.robust_t_test.Rd man/best.robust_t_test_batch.Rd man/best.student_t.Rd man/boxplot.jitter.Rd man/calc_allelic_freqs.Rd man/cmds.focal.test.Rd man/combine.test.Rd man/compute.absCN.Rd man/diag.mcmc.Rd man/dist.JSD.Rd man/dudi.acm.Rd man/get.mutland.Rd man/ggPlotMutationalSignatures.Rd man/ggboxplot.Rd man/ggforestplot.Rd man/glmfit.Rd man/landscape.data.Rd man/legoplot.Rd man/lm2.Rd man/mshapiro.test.Rd man/mut_cor_permu_test.Rd man/mutsig.gene.Rd man/mutsig.pathway.Rd man/mutsigcl_global.Rd man/mutsigclfn.Rd man/mutsigcv.sig.pathway.Rd man/mutsignr.Rd man/nature12912_260_Smg.Rd man/oncoprinter.Rd man/optimcluster.Rd man/pileup_freqs.Rd man/plot.96.spectra.Rd man/plot.CoocurExclus.Rd man/plot.MH.Rd man/plot.SciClone.Rd man/plot.absCN.Rd man/plot.coocur.Rd man/plot.coocur2.Rd man/plot.coxph.Rd man/plot.depth.Rd man/plot.landscape2.Rd man/plot.logit.Rd man/plot.multinom.Rd man/plot.mutation.signature.Rd man/plot.mutational.exposures.Rd man/plot.mutational.processes.Rd man/plot.spectra.Rd man/plot.surv.curve.Rd man/plot.survfit.lixc.Rd man/plotMutationalProcesses.Rd man/plotPost.Rd man/rank.based.INT.Rd man/run.absCNSeq.Rd man/runRF.Rd man/s.class2.Rd man/sort.data.frame.Rd man/sort.data.frame.by.index.Rd man/sortDataFrame.Rd man/stanfit2mcmc.list.Rd man/unicoxph.Rd man/vioplot.Rd man/vioplot2.Rd man/which.xy.Rd
lixiangchun/lxctk documentation built on May 21, 2017, 1:40 p.m.