Description Usage Arguments Details See Also Examples
Correlation matrix diagonal segmentation(CMDS) to identify recurrent CNV.
1 | cmds.focal.test(data, out.file, wsize=30, wstep=1, chromosomes=paste("chr",1:22, sep=""))
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data |
A data frame with |
out.file |
Output file. |
wsize |
Block size. |
wstep |
Step size. |
chromosomes |
A vector of chromosomes analyzed. |
Qunyuan Zhang et al. CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data Bioinformatics 2010(464-469).
The R source code was downloaded from: https://dsgweb.wustl.edu/qunyuan/software/cmds
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1 2 | data("cmds")
cmds.focal.test(chr11q, out.file="out.txt", chromosomes="11")
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