mut_cor_permu_test: MuSiC Mutation Relation Analysis
In lixiangchun/lxctk: Li Xiangchun's tool-kit (lxctk)

Mutation relation analysis (source code from MuSiC version 0.04).

1	mut_cor_permu_test(x=NULL,n.permu=100,seed=NULL,mut.file=NULL,out.file=NULL,out.rdata=NULL)

`x`	Mutation relation matrix with gene and sample as column and row names, respectively. Non-zero cell indicates mutation, and zero wild-type.
`n.permu`	Number of permutations.
`seed`	Random seed.
`mut.file`	File to store mutation relation, if x not specified, read from this file.
`out.file`	Output text file.
`out.rdata`	Output RDATA file.

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data("CRCMutMat", package='lxctk')
res=mut_cor_permu_test(x=mutmat[1:20, 1:20], n.permu=100)
mut_cor_permu_test(x=mutmat, n.permu=100, out.file="CRCMutMat.txt")