Description Usage Arguments Examples
View source: R/MutationRelation.pm.R
Mutation relation analysis (source code from MuSiC version 0.04).
1 |
x |
Mutation relation matrix with gene and sample as column and row names, respectively. Non-zero cell indicates mutation, and zero wild-type. |
n.permu |
Number of permutations. |
seed |
Random seed. |
mut.file |
File to store mutation relation, if x not specified, read from this file. |
out.file |
Output text file. |
out.rdata |
Output RDATA file. |
1 2 3 | data("CRCMutMat", package='lxctk')
res=mut_cor_permu_test(x=mutmat[1:20, 1:20], n.permu=100)
mut_cor_permu_test(x=mutmat, n.permu=100, out.file="CRCMutMat.txt")
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