mut_cor_permu_test: MuSiC Mutation Relation Analysis

Description Usage Arguments Examples

View source: R/MutationRelation.pm.R

Description

Mutation relation analysis (source code from MuSiC version 0.04).

Usage

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mut_cor_permu_test(x=NULL,n.permu=100,seed=NULL,mut.file=NULL,out.file=NULL,out.rdata=NULL)

Arguments

x

Mutation relation matrix with gene and sample as column and row names, respectively. Non-zero cell indicates mutation, and zero wild-type.

n.permu

Number of permutations.

seed

Random seed.

mut.file

File to store mutation relation, if x not specified, read from this file.

out.file

Output text file.

out.rdata

Output RDATA file.

Examples

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data("CRCMutMat", package='lxctk')
res=mut_cor_permu_test(x=mutmat[1:20, 1:20], n.permu=100)
mut_cor_permu_test(x=mutmat, n.permu=100, out.file="CRCMutMat.txt")

lixiangchun/lxctk documentation built on May 21, 2019, 6:44 a.m.