getAllGenes4BrainRegion: Get all genes for brain region for particular specie

In lptolik/synaptome.db: Synamptosome Proteome Database

Get all genes for brain region for particular specie

Description

Get all genes annotated for specific brain region for specific specie. Function lookups Brain Region ID and Specie Tax ID columns and returns main information like internal Gene IDs, MGI ID, Human Entrez ID, Human Gene Name, Mouse Entrez ID, Mouse Gene Name, Localisation (presynaptic, postsynaptic, synaptosomal), PaperPMID and BrainRegion.

Usage

getAllGenes4BrainRegion(brainRegion, taxID)

Arguments

brainRegion	ID for specific brain region
taxID	specie ID

Value

data.frame with the following columns:

• GeneID

• Localisation

• MGI

• HumanEntrez

• MouseEntrez

• HumanName

• MouseName

• PMID

• Paper

• Year

• SpeciesTaxID

• BrainRegion

See Also

Other BrainRegion functions: getBrainRegions(), getGenes4BrainRegion(), getPPIbyIDs4BrainRegion()

Other BrainRegion Gene functions: getGenes4BrainRegion()

Examples

gns <- getAllGenes4BrainRegion(brainRegion = "Striatum", taxID = 10090)
head(gns)

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.