findGenesByEntrez: Internal Gene representation for given list of gene Entrez...

In lptolik/synaptome.db: Synamptosome Proteome Database

Internal Gene representation for given list of gene Entrez IDs

Description

Get internal gene representation for set of gene Entrez IDs. Function lookups for provided values in Human Entrez ID, Mouse Entrez ID and Rat Entrez ID columns and return following features for all found genes: GeneID (internal database ID), MGI ID, Human Entrez ID, Mouse Entrez ID, Rat Entrez ID, Human gene name, Mouse gene name and Rat gene name.

Usage

findGenesByEntrez(entrez)

Arguments

entrez

vector of Entres IDs. Function accepts both integers and characters.

Details

Could be used as an intermediate step for building Protein-Protein interaction map from the list of Gene IDs returned in the first column. Also, this function provides a useful sanity check, e.g. how many Gene IDs correspond to the specific gene name or Entrez ID, which could be specie-specific.

Value

data.frame with columns specified above.

See Also

Other Lookup functions: findGenesByName()

Other Gene functions: findGeneByCompartmentPaperCnt(), findGeneByPaperCnt(), findGeneByPapers(), findGenesByName(), getAllGenes4Compartment(), getGenes4Compartment(), getGenesByID()

Examples

# get information for specific gene
t <- findGenesByEntrez(c(1742, 1741, 1739, 1740))

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.