getMutations4DiseaseByIDs: Get mutational information for Gene and Disease

In lptolik/synaptome.db: Synamptosome Proteome Database

Get mutational information for Gene and Disease

Description

Function looks up the information for particular set of GeneIDs and disease HDOID.

Usage

getMutations4DiseaseByIDs(ids, hdoid)

Arguments

ids	internal GeneIDs to filter mutation data
hdoid	disease HDOID to get mutational association.

Details

This function then returns following features for all found genes:

• GeneID,

• MGI,

• MouseEntrez,

• MouseName,

• HumanName,

• HumanEntrez,

• HDOID,

• Disease,

• Chromosome,

• Position,

• Variant,

• FunctionClass,

• cDNAvariant,

• ProteinVariant,

• DENOVO,

• SFARI,

• EpilepsyGene,

• ClinVar,

• PMID,

• Paper

Value

data.frame with fields specified above.

See Also

Other Mutation functions: getMutations4DiseaseByEntres(), getMutations4DiseaseByName()

Examples

hdoid<-'DOID:0060041'
ids<-c(6,32,127,181,240,267,558)
mdf<-getMutations4DiseaseByIDs(ids, hdoid)
is.null(mdf)

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.