graphFromSynaptomeByEntrez: Utility function to create network from 'synaptome.db' data
In lptolik/synaptome.db: Synamptosome Proteome Database

graphFromSynaptomeByEntrez

R Documentation

Utility function to create network from `synaptome.db` data

Description

Utility function to create network from synaptome.db data

Usage

graphFromSynaptomeByEntrez(entrez, LCC = TRUE, simplify = TRUE)

Arguments

`entrez`	vector of EntrezIDs for network vertices
`LCC`	if TRUE only largest connected component is returned
`simplify`	if TRUE loops and multiple edges will be removed

Value

network defined by the gene table

Examples

library(synaptome.db)
cid<-match('Presynaptic', getCompartments()$Name)
geneTable<-getAllGenes4Compartment(cid)
gg<-graphFromSynaptomeByEntrez(geneTable$HumanEntrez)

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.