getGeneInfoByIDs: Get GeneInfo table for set of GeneIDs

In lptolik/synaptome.db: Synamptosome Proteome Database

Get GeneInfo table for set of GeneIDs

Description

Function lookup for internal GeneID values and return following features for all found genes: GeneID (internal database ID), Localisation (one of the following: presynaptic, postsynaptic, synaptosome), MGI (MGI ID), HumanEntrez (Human Entrez ID), MouseEntrez (Mouse Entrez ID), HumanName (Human gene name), MouseName (Mouse gene name), PaperPMID (PMID IDs for the publications where the genes were reported), Paper (papers where specific genes were reported in a format FIRSTAUTHOR_YEAR), Year, SpeciesTaxID (specie the original experiment was performed on), BrainRegion (Brain region where the specific genes were identified, according to the paper)

Usage

getGeneInfoByIDs(ids)

Arguments

ids	vector of Gene IDs.

Details

This function then returns following features for all found genes:

• GeneID,

• Localisation,

• MGI,

• HumanEntrez,

• MouseEntrez,

• HumanName,

• MouseName,

• PaperPMID,

• Paper,

• Year,

• SpeciesTaxID,

• BrainRegion

Value

data.frame with column specified above.

See Also

Other GeneInfo functions: getGeneInfoByEntrez(), getGeneInfoByName(), getGeneInfoByPapers()

Examples

gdf <- getGeneInfoByIDs(c(46, 6, 15, 1))

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.