getGenes4Compartment: Select genes from the list that found in compartment

In lptolik/synaptome.db: Synamptosome Proteome Database

Select genes from the list that found in compartment

Description

Select all genes from your list annotated for specific compartment. Should be used with findGenesByEntrez() or findGenesByName() functions to obtain list of internal IDs for your list of genes. Function lookups the Gene table for specified localisation and returns main gene information like internal Gene IDs, MGI ID, Human Entrez ID, Human Gene Name, Mouse Entrez ID, Mouse Gene Name, Rat Entrez ID, Rat Gene Name.

Usage

getGenes4Compartment(ids, compartmentID)

Arguments

ids	Gene IDs
compartmentID	compartment ID

Value

data.frame described in getGenesByID()

See Also

Other Gene functions: findGeneByCompartmentPaperCnt(), findGeneByPaperCnt(), findGeneByPapers(), findGenesByEntrez(), findGenesByName(), getAllGenes4Compartment(), getGenesByID()

Other Compartment functions: getAllGenes4Compartment(), getCompartments(), getPPIbyIDs4Compartment()

Examples

Genes <- getGenes4Compartment(c(1, 15, 156, 1500, 3000, 7000),
    compartmentID = 1
)

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.