getGenes4BrainRegion: Select genes from the list that found in brain region of...

In lptolik/synaptome.db: Synamptosome Proteome Database

Select genes from the list that found in brain region of particular specie

Description

Select genes from your list annotated for specific brain region. Should be used with findGenesByEntrez() or findGenesByName() functions to obtain list of internal IDs for your list of genes. Function lookups the Gene table for specified localisation and returns main gene information like internal Gene IDs, MGI ID, Human Entrez ID, Human Gene Name, Mouse Entrez ID, Mouse Gene Name, PaperPMID, Localisation and BrainRegion.

Usage

getGenes4BrainRegion(ids, brainRegion, taxID)

Arguments

ids	internal IDs for list of genes
brainRegion	ID for the brain region of interest
taxID	taxon ID specie tax ID

Value

data.frame with the following columns:

• GeneID

• Localisation

• MGI

• HumanEntrez

• MouseEntrez

• HumanName

• MouseName

• PMID

• Paper

• Year

• SpeciesTaxID

• BrainRegion

See Also

Other BrainRegion functions: getAllGenes4BrainRegion(), getBrainRegions(), getPPIbyIDs4BrainRegion()

Other BrainRegion Gene functions: getAllGenes4BrainRegion()

Examples

Genes <- getGenes4BrainRegion(c(1, 15, 156, 1500, 3000, 7000),
    brainRegion = "Striatum", taxID = 10090
) # 5 rows

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.