getGenes4BrainRegion: Select genes from the list that found in brain region of...

Description Usage Arguments Value See Also Examples

View source: R/brain_regions.R

Description

Select genes from your list annotated for specific brain region. Should be used with findGenesByEntrez() or findGenesByName() functions to obtain list of internal IDs for your list of genes. Function lookups the Gene table for specified localisation and returns main gene information like internal Gene IDs, MGI ID, Human Entrez ID, Human Gene Name, Mouse Entrez ID, Mouse Gene Name, PaperPMID, Localisation and BrainRegion.

Usage

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getGenes4BrainRegion(ids, brainRegion, taxID)

Arguments

ids

internal IDs for list of genes

brainRegion

ID for the brain region of interest

taxID

taxon ID specie tax ID

Value

data.frame with the following columns:

See Also

Other BrainRegion functions: getAllGenes4BrainRegion(), getBrainRegions(), getPPIbyIDs4BrainRegion()

Other BrainRegion Gene functions: getAllGenes4BrainRegion()

Examples

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Genes <- getGenes4BrainRegion(c(1, 15, 156, 1500, 3000, 7000),
    brainRegion = "Striatum", taxID = 10090
) # 5 rows

lptolik/synaptome.db documentation built on Dec. 21, 2021, 11:50 a.m.