getMutations4DiseaseByName: Get mutational information for Gene and Disease

In lptolik/synaptome.db: Synamptosome Proteome Database

Get mutational information for Gene and Disease

Description

Function lookups for provided values in Human Name, Mouse Name and Rat Name columns, extract known mutations, filter requested HDOID and return data.frame in the format described in getMutations4DiseaseByIDs.

Usage

getMutations4DiseaseByName(name, hdoid)

Arguments

name	gene names to look for
hdoid	disease HDOID to get mutational association.

Value

data.frame as described in getMutations4DiseaseByIDs.

See Also

findGenesByName

Other Mutation functions: getMutations4DiseaseByEntres(), getMutations4DiseaseByIDs()

Examples

hdoid<-'DOID:0060041'
name<-c("Dlg2", "Map1a", "Phb", "Gphn", "Cacna2d1", "Negr1", "Rgs7")
mdf<-getMutations4DiseaseByName(name, hdoid)
is.null(mdf)

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.