gsea_analysis: Perform Gene Set Enrichment Analysis
In luciorq/txomics: Functional Analysis and Visualization of Transcriptomic Data
Description
Usage
Arguments
Value
Description
Perform GSEA analysis.
Usage
1
gsea_analysis(de_res, gene_sets, fdr = NULL, file_ext = "gmt")
Arguments
de_res
results from de_analysis function
gene_sets
tidy data frame of the gene sets or
named list of genes named by gene set
fdr
should fdr be used, default = NULL.
If fdr = NULL, uses only log2FoldChange to rank.
file_ext
File extension where the gene
sets should be loaded GMT is the default for GSEA
rds to load rds saved files. DEPRECATED
Value
A tibble containing GSEA results
luciorq/txomics documentation built on Sept. 3, 2020, 5:36 a.m.
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Description Usage Arguments Value
Description
Perform GSEA analysis.
Usage
1 | gsea_analysis(de_res, gene_sets, fdr = NULL, file_ext = "gmt")
|
Arguments
de_res |
results from de_analysis function |
gene_sets |
tidy data frame of the gene sets or named list of genes named by gene set |
fdr |
should fdr be used, default = NULL. If fdr = NULL, uses only log2FoldChange to rank. |
file_ext |
File extension where the gene sets should be loaded GMT is the default for GSEA rds to load rds saved files. DEPRECATED |
Value
A tibble containing GSEA results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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