plot_deg_heatmap: Plot Differentially Expressed Genes Heatmap

In luciorq/txomics: Functional Analysis and Visualization of Transcriptomic Data

Description

Plot a expression heatmap of differentially expressed genes de_analysis

Usage

plot_deg_heatmap(de_res, tx, pvalue = 0.05, fdr = FALSE,
  row_names = NULL)

Arguments

de_res	results from de_analysis function
tx	txi object, object imported with 'import_tx()' or data frame wih gene abundance
pvalue	p-value cut-off for enrichment or differential consideration, default = 0.05
fdr	logical, default = FALSE should False discovery rate adjusted pvalue be used instead of pvalue
row_names	variable / coluimn name used for gene / row annotation. Default = "gene" column

luciorq/txomics documentation built on Sept. 3, 2020, 5:36 a.m.