plot_gsea: Plot GSEA Enrichment Curve and Table

In luciorq/txomics: Functional Analysis and Visualization of Transcriptomic Data

Description

Plots enrichment table and individual enrichment graph for GSEA analysis results

Usage

plot_gsea(gsea_res, de_res, gene_sets, top_sets = 10,
  enrichment = FALSE, title = NULL)

Arguments

gsea_res	result from gsea_analysis
de_res	results from de_analysis function
gene_sets	named list of genes named by gene set
top_sets	Number of sets to be plotted in the gsea table, the number of sets to be plotted is the double of the value of top_sets or a string for individual gene set for enrichment plot
enrichment	If set to TRUE, enrichment for individual gene set will be plotted. The default value is FALSE, for plotting GSEA table.
title	title label to be shown for enchment plot, should be a character vector of the text to be plotted or TRUE for using the .default = NULL, no text plotted.

Value

graphs for gsea table or gsea individual set

luciorq/txomics documentation built on Sept. 3, 2020, 5:36 a.m.