Files in macintyrelab/CNpare

Comparing tumour copy number profiles

LICENSE.md NEWS.md R/CNpare-package.R R/cnsignature_functions.R R/data.R R/dataprocessing_functions.R R/globalVariables.R R/plotting.R R/qtool_functions.R R/quantifydiff_functions.R README.Rmd README.md man/CCLE_metadata.Rd man/CNPlot_events.Rd man/CNconvert.Rd man/CNpare-package.Rd man/calculateSumOfPosteriors.Rd man/cells_mapping.Rd man/cells_segcn.Rd man/extractCopynumberFeatures.Rd man/generateSampleByComponentMatrix.Rd man/getBPnum.Rd man/getBinsStartsEnds.Rd man/getCINProfiles.Rd man/getCINSamp.Rd man/getCN.Rd man/getCNbins.Rd man/getCNbins.bin.Rd man/getCNbins.sample.Rd man/getCentromereDistCounts.Rd man/getChangepointCN.Rd man/getClusterSamples.Rd man/getDifference.Rd man/getInputmatrix.Rd man/getNewSegments.Rd man/getPloidy.Rd man/getProfiles.Rd man/getSampNames.Rd man/getSegRounded.Rd man/getSegTable.Rd man/getSegsize.Rd man/getSimilarities.Rd man/getSimilarities.sample.Rd man/getTopHit.Rd man/getUnifiedCN.Rd man/lengthChr.Rd man/lower_norm.Rd man/normaliseMatrix.Rd man/pair_cosine.Rd man/pair_euclidean.Rd man/pair_manhattan.Rd man/pair_pearson.Rd man/plotClusters.Rd man/plot_diffdensity.Rd man/plot_simdensity.Rd man/quantifySignatures.Rd man/unifySegments.Rd vignettes/CNpare_Workflow.R vignettes/CNpare_Workflow.Rmd