unifySegments: Alignment of genomic positions of segments

In macintyrelab/CNpare: Comparing tumour copy number profiles

Alignment of genomic positions of segments

Description

This function unifies boundaries of copy-number segments. Before to apply this function, please double-check that both profiles include the same chromosomes

Usage

unifySegments(posSeg, data, window = 1e+05)

Arguments

posSeg	dataframe with segments of the reference sample
data	dataframe with segments of the experimental model
window	boundary margin for smoothing segments. Default is 100000

Value

dataframe with segments of the model aligned to those in reference

Examples

unify<-unifySegments(posSeg=cells_segcn[cells_segcn$sample=="OVKATE",],
    data=cells_segcn[cells_segcn$sample=="OV-90",])

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.