Files in macintyrelab/CNpare
Comparing tumour copy number profiles
.Rbuildignore
.gitignore
.travis.yml
CNpare.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/CNpare-package.R
R/cnsignature_functions.R
R/data.R
R/dataprocessing_functions.R
R/globalVariables.R
R/plotting.R
R/qtool_functions.R
R/quantifydiff_functions.R
R/sysdata.rda
README.Rmd
README.md
data/CCLE_metadata.RData
data/cells_mapping.RData
data/cells_segcn.RData
data/lengthChr.RData
man/CCLE_metadata.Rd
man/CNPlot_events.Rd
man/CNconvert.Rd
man/CNpare-package.Rd
man/calculateSumOfPosteriors.Rd
man/cells_mapping.Rd
man/cells_segcn.Rd
man/extractCopynumberFeatures.Rd
man/generateSampleByComponentMatrix.Rd
man/getBPnum.Rd
man/getBinsStartsEnds.Rd
man/getCINProfiles.Rd
man/getCINSamp.Rd
man/getCN.Rd
man/getCNbins.Rd
man/getCNbins.bin.Rd
man/getCNbins.sample.Rd
man/getCentromereDistCounts.Rd
man/getChangepointCN.Rd
man/getClusterSamples.Rd
man/getDifference.Rd
man/getInputmatrix.Rd
man/getNewSegments.Rd
man/getPloidy.Rd
man/getProfiles.Rd
man/getSampNames.Rd
man/getSegRounded.Rd
man/getSegTable.Rd
man/getSegsize.Rd
man/getSimilarities.Rd
man/getSimilarities.sample.Rd
man/getTopHit.Rd
man/getUnifiedCN.Rd
man/lengthChr.Rd
man/lower_norm.Rd
man/normaliseMatrix.Rd
man/pair_cosine.Rd
man/pair_euclidean.Rd
man/pair_manhattan.Rd
man/pair_pearson.Rd
man/plotClusters.Rd
man/plot_diffdensity.Rd
man/plot_simdensity.Rd
man/quantifySignatures.Rd
man/unifySegments.Rd
vignettes/CNpare_Workflow.R
vignettes/CNpare_Workflow.Rmd
vignettes/CNpare_Workflow.html
