CNconvert: A helper function for CNPlot_events
In macintyrelab/CNpare: Comparing tumour copy number profiles
CNconvert R Documentation
A helper function for CNPlot_events
Description
This function prepare profiles for plotting
Usage
CNconvert(e, base)
Arguments
e
segment table with absolute copy numbers
base
sizes of chromosomes
Value
segment table prepared for plotting
Examples
exp_cell=cells_segcn[cells_segcn$sample=="22RV1",]
base=CNpare:::chr_sizes
base$length<-1e-6*base$length #Convert sizes to Mb
base$offset<-cumsum(base$length)-base$length #Calculate the interval range of each chr
events<-CNconvert(exp_cell,base)
macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.
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| CNconvert | R Documentation |
A helper function for CNPlot_events
Description
This function prepare profiles for plotting
Usage
CNconvert(e, base)
Arguments
e |
segment table with absolute copy numbers |
base |
sizes of chromosomes |
Value
segment table prepared for plotting
Examples
exp_cell=cells_segcn[cells_segcn$sample=="22RV1",] base=CNpare:::chr_sizes base$length<-1e-6*base$length #Convert sizes to Mb base$offset<-cumsum(base$length)-base$length #Calculate the interval range of each chr events<-CNconvert(exp_cell,base)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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