getTopHit: Get top hits

In macintyrelab/CNpare: Comparing tumour copy number profiles

Get top hits

Description

This function get the top hit for each comparison per sample

Usage

getTopHit(samples, measure, method = "all")

Arguments

samples	vector with name of samples
measure	dataframe with similarity metrics
method	similarity metric to use for ordering. Default is all

Value

dataframe with similarity metrics for all comparisons

Examples

posBins<-lapply(1,function(chr)
    getBinsStartsEnds(window=1000000, chr, lengthChr[chr]))
ccle_cn<-getCNbins(posBins=posBins, data=cells_segcn, samples=unique(cells_segcn$sample)[1:2])
exp_cell<-as.matrix(ccle_cn[,1])
colnames(exp_cell)<-unique(cells_segcn$sample)[1]
measures<-getSimilarities(dat1=exp_cell,dat2=ccle_cn,method="pearson")
tophits<-getTopHit(samples=unique(cells_segcn$sample)[1],measure=measures,method="pearson")

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.