getCNbins: Get copy-number per bins
In macintyrelab/CNpare: Comparing tumour copy number profiles

View source: R/dataprocessing_functions.R

getCNbins

R Documentation

Get copy-number per bins

Description

This function transform segment tables to bin tables

Usage

getCNbins(posBins, data, samples)

Arguments

`posBins`	list with genomic positions of bins. Each list contains data from each chromosome. Obtained from getBinsStartsEnds
`data`	segment table of copy numbers of all samples
`samples`	vector with sample names

Value

bin table of copy numbers of all samples

Examples

posBins <- lapply(1,function(chr)
    getBinsStartsEnds(window=1000000, chr, lengthChr[chr]))
cells_bin <- getCNbins(posBins=posBins,
    data=cells_segcn[cells_segcn$sample=="22RV1",], samples="22RV1")

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.