CNpare-package: CNpare: Comparing tumour copy number profiles

In macintyrelab/CNpare: Comparing tumour copy number profiles

CNpare: Comparing tumour copy number profiles

Description

CNpare is designed to compare and contrast genome-wide tumour copy number profiles. This package can be used to: 1) calculate similarities between copy-number profiles, 2) quantify the extent of genome differences between copy-number profiles, and 3) compare profiles based on copy-number signatures. The most basic initial input to the CNpare package consists of a data frame containing the segmented copy number profile from a tumor sample, which can be compared to the cells_segcn.RData included in this package in order to find the most representative model system.

Author(s)

Maintainer: Barbara Hernando [e-mail]

Authors:

• Blas Chaves [e-mail]

• Geoff Macintyre [e-mail]

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.