Metadata.Platforms: Translate TCGA platform codes to full platform names.

Description Usage Arguments

View source: R/Metadata.Platforms.R

Description

By default this function returns a table of all of the technology platforms used to sequence or characterize samples in TCGA–both their short platform codes and full names. A subset of this table may be obtained by explicitly specifying one or more platform codes.

Usage

1
Metadata.Platforms(format = "json", platform = "")

Arguments

format

Format of result. Default value is json. While json,tsv,csv are available.

platform

Narrow search to one or more TCGA data generation platforms from the scrollable list. Multiple values are allowed 454,ABI,AgilentG4502A_07,AgilentG4502A_07_1,AgilentG4502A_07_2,AgilentG4502A_07_3,bio,biotab,CGH-1x1M_G4447A,diagnostic_images,fh_analyses,fh_reports,fh_stddata,Genome_Wide_SNP_6,GenomeWideSNP_5,H-miRNA_8x15K,H-miRNA_8x15Kv2,H-miRNA_EarlyAccess,H-miRNA_G4470A,HG-CGH-244A,HG-CGH-415K_G4124A,HG-U133_Plus_2,HG-U133A_2,HT_HG-U133A,HuEx-1_0-st-v2,Human1MDuo,HumanHap550,HumanMethylation27,HumanMethylation450,IlluminaDNAMethylation_OMA002_CPI,IlluminaDNAMethylation_OMA003_CPI,IlluminaGA_DNASeq,IlluminaGA_DNASeq_automated,IlluminaGA_DNASeq_Cont,IlluminaGA_DNASeq_Cont_automated,IlluminaGA_DNASeq_Cont_curated,IlluminaGA_DNASeq_curated,IlluminaGA_miRNASeq,IlluminaGA_mRNA_DGE,IlluminaGA_RNASeq,IlluminaGA_RNASeqV2,IlluminaGG,IlluminaHiSeq_DNASeq,IlluminaHiSeq_DNASeq_automated,IlluminaHiSeq_DNASeq_Cont,IlluminaHiSeq_DNASeq_Cont_automated,IlluminaHiSeq_DNASeq_Cont_curated,IlluminaHiSeq_DNASeq_curated,IlluminaHiSeq_DNASeqC,IlluminaHiSeq_miRNASeq,IlluminaHiSeq_mRNA_DGE,IlluminaHiSeq_RNASeq,IlluminaHiSeq_RNASeqV2,IlluminaHiSeq_TotalRNASeqV2,IlluminaHiSeq_WGBS,Mapping250K_Nsp,Mapping250K_Sty,MDA_RPPA_Core,microsat_i,minbio,minbiotab,Mixed_DNASeq,Mixed_DNASeq_automated,Mixed_DNASeq_Cont,Mixed_DNASeq_Cont_automated,Mixed_DNASeq_Cont_curated,Mixed_DNASeq_curated,pathology_reports,SOLiD_DNASeq,SOLiD_DNASeq_automated,SOLiD_DNASeq_Cont,SOLiD_DNASeq_Cont_automated,SOLiD_DNASeq_Cont_curated,SOLiD_DNASeq_curated,tissue_images,WHG-1x44K_G4112A,WHG-4x44K_G4112F,WHG-CGH_4x44B.


mariodeng/FirebrowseR documentation built on May 21, 2017, 6:48 p.m.