Metadata.Platforms: Translate TCGA platform codes to full platform names.
In mariodeng/FirebrowseR: An 'API' Client for Broads 'Firehose' Pipeline
View source: R/Metadata.Platforms.R
Description
By default this function returns a table of all of the technology platforms used to sequence or characterize samples in TCGA–both their short platform codes and full names. A subset of this table may be obtained by explicitly specifying one or more platform codes.
Usage
1
Metadata.Platforms(format = "json", platform = "")
Arguments
format
Format of result. Default value is json. While json,tsv,csv are available.
platform
Narrow search to one or more TCGA data generation platforms from the scrollable list. Multiple values are allowed 454,ABI,AgilentG4502A_07,AgilentG4502A_07_1,AgilentG4502A_07_2,AgilentG4502A_07_3,bio,biotab,CGH-1x1M_G4447A,diagnostic_images,fh_analyses,fh_reports,fh_stddata,Genome_Wide_SNP_6,GenomeWideSNP_5,H-miRNA_8x15K,H-miRNA_8x15Kv2,H-miRNA_EarlyAccess,H-miRNA_G4470A,HG-CGH-244A,HG-CGH-415K_G4124A,HG-U133_Plus_2,HG-U133A_2,HT_HG-U133A,HuEx-1_0-st-v2,Human1MDuo,HumanHap550,HumanMethylation27,HumanMethylation450,IlluminaDNAMethylation_OMA002_CPI,IlluminaDNAMethylation_OMA003_CPI,IlluminaGA_DNASeq,IlluminaGA_DNASeq_automated,IlluminaGA_DNASeq_Cont,IlluminaGA_DNASeq_Cont_automated,IlluminaGA_DNASeq_Cont_curated,IlluminaGA_DNASeq_curated,IlluminaGA_miRNASeq,IlluminaGA_mRNA_DGE,IlluminaGA_RNASeq,IlluminaGA_RNASeqV2,IlluminaGG,IlluminaHiSeq_DNASeq,IlluminaHiSeq_DNASeq_automated,IlluminaHiSeq_DNASeq_Cont,IlluminaHiSeq_DNASeq_Cont_automated,IlluminaHiSeq_DNASeq_Cont_curated,IlluminaHiSeq_DNASeq_curated,IlluminaHiSeq_DNASeqC,IlluminaHiSeq_miRNASeq,IlluminaHiSeq_mRNA_DGE,IlluminaHiSeq_RNASeq,IlluminaHiSeq_RNASeqV2,IlluminaHiSeq_TotalRNASeqV2,IlluminaHiSeq_WGBS,Mapping250K_Nsp,Mapping250K_Sty,MDA_RPPA_Core,microsat_i,minbio,minbiotab,Mixed_DNASeq,Mixed_DNASeq_automated,Mixed_DNASeq_Cont,Mixed_DNASeq_Cont_automated,Mixed_DNASeq_Cont_curated,Mixed_DNASeq_curated,pathology_reports,SOLiD_DNASeq,SOLiD_DNASeq_automated,SOLiD_DNASeq_Cont,SOLiD_DNASeq_Cont_automated,SOLiD_DNASeq_Cont_curated,SOLiD_DNASeq_curated,tissue_images,WHG-1x44K_G4112A,WHG-4x44K_G4112F,WHG-CGH_4x44B.
mariodeng/FirebrowseR documentation built on May 21, 2019, 11:46 a.m.
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View source: R/Metadata.Platforms.R
Description
By default this function returns a table of all of the technology platforms used to sequence or characterize samples in TCGA–both their short platform codes and full names. A subset of this table may be obtained by explicitly specifying one or more platform codes.
Usage
1 | Metadata.Platforms(format = "json", platform = "")
|
Arguments
format |
Format of result. Default value is json. While json,tsv,csv are available. |
platform |
Narrow search to one or more TCGA data generation platforms from the scrollable list. Multiple values are allowed 454,ABI,AgilentG4502A_07,AgilentG4502A_07_1,AgilentG4502A_07_2,AgilentG4502A_07_3,bio,biotab,CGH-1x1M_G4447A,diagnostic_images,fh_analyses,fh_reports,fh_stddata,Genome_Wide_SNP_6,GenomeWideSNP_5,H-miRNA_8x15K,H-miRNA_8x15Kv2,H-miRNA_EarlyAccess,H-miRNA_G4470A,HG-CGH-244A,HG-CGH-415K_G4124A,HG-U133_Plus_2,HG-U133A_2,HT_HG-U133A,HuEx-1_0-st-v2,Human1MDuo,HumanHap550,HumanMethylation27,HumanMethylation450,IlluminaDNAMethylation_OMA002_CPI,IlluminaDNAMethylation_OMA003_CPI,IlluminaGA_DNASeq,IlluminaGA_DNASeq_automated,IlluminaGA_DNASeq_Cont,IlluminaGA_DNASeq_Cont_automated,IlluminaGA_DNASeq_Cont_curated,IlluminaGA_DNASeq_curated,IlluminaGA_miRNASeq,IlluminaGA_mRNA_DGE,IlluminaGA_RNASeq,IlluminaGA_RNASeqV2,IlluminaGG,IlluminaHiSeq_DNASeq,IlluminaHiSeq_DNASeq_automated,IlluminaHiSeq_DNASeq_Cont,IlluminaHiSeq_DNASeq_Cont_automated,IlluminaHiSeq_DNASeq_Cont_curated,IlluminaHiSeq_DNASeq_curated,IlluminaHiSeq_DNASeqC,IlluminaHiSeq_miRNASeq,IlluminaHiSeq_mRNA_DGE,IlluminaHiSeq_RNASeq,IlluminaHiSeq_RNASeqV2,IlluminaHiSeq_TotalRNASeqV2,IlluminaHiSeq_WGBS,Mapping250K_Nsp,Mapping250K_Sty,MDA_RPPA_Core,microsat_i,minbio,minbiotab,Mixed_DNASeq,Mixed_DNASeq_automated,Mixed_DNASeq_Cont,Mixed_DNASeq_Cont_automated,Mixed_DNASeq_Cont_curated,Mixed_DNASeq_curated,pathology_reports,SOLiD_DNASeq,SOLiD_DNASeq_automated,SOLiD_DNASeq_Cont,SOLiD_DNASeq_Cont_automated,SOLiD_DNASeq_Cont_curated,SOLiD_DNASeq_curated,tissue_images,WHG-1x44K_G4112A,WHG-4x44K_G4112F,WHG-CGH_4x44B. |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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