Analyses.Mutation.SMG: Retrieve Significantly Mutated Genes (SMG).
In mariodeng/FirebrowseR: An 'API' Client for Broads 'Firehose' Pipeline

This service provides a list of significantly mutated genes, as scored by MutSig. It may be filtered by cohort, rank, gene, tool and/or Q-value threshold, but at least one cohort or gene must be supplied.

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Analyses.Mutation.SMG(format = "json", cohort = "", tool = "MutSig2CV",
  rank = "", gene = "", q = "", page = "1", page_size = "250",
  sort_by = "rank")

`format`	Format of result. Default value is json. While json,tsv,csv are available.
`cohort`	Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM.
`tool`	Narrow search to include only data/results produced by the selected Firehose tool. Multiple values are allowed MutSig2.0,MutSig2CV,MutSigCV. Default value is MutSig2CV.
`rank`	Number of significant genes to return.
`gene`	Comma separated list of gene name(s). Multiple values are allowed .
`q`	Only return results with Q-value <= given threshold.
`page`	Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1.
`page_size`	Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250.
`sort_by`	Which column in the results should be used for sorting paginated results? Default value is rank. While q,cohort,tool,gene,rank are available.