View source: R/Samples.mRNASeq.R
This service returns sample-level log2 mRNASeq expression values. Results may be filtered by gene, cohort, barcode, sample type or characterization protocol, but at least one gene must be supplied.
1 2 3 | Samples.mRNASeq(format = "json", gene = "", cohort = "",
tcga_participant_barcode = "", sample_type = "", protocol = "RSEM",
page = "1", page_size = "250", sort_by = "cohort")
|
format |
Format of result. Default value is json. While json,tsv,csv are available. |
gene |
Comma separated list of gene name(s). Multiple values are allowed . |
cohort |
Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM. |
tcga_participant_barcode |
Comma separated list of TCGA participant barcodes (e.g. TCGA-GF-A4EO). Multiple values are allowed . |
sample_type |
Narrow search to one or more TCGA sample types from the scrollable list. Multiple values are allowed NB,NBC,NBM,NT,TAM,TAP,TB,TM,TP,TR. |
protocol |
Narrow search to one or more sample characterization protocols from the scrollable list. Multiple values are allowed RPKM,RSEM. Default value is RSEM. |
page |
Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1. |
page_size |
Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250. |
sort_by |
Which column in the results should be used for sorting paginated results? Default value is cohort. While tcga_participant_barcode,cohort,gene,protocol,sample_type are available. |
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