View source: R/Analyses.CopyNumber.Genes.Amplified.R
This service provides access to the Gistic2 amp_genes.conf_99.txt output data. At least 1 gene or cohort must be supplied.
1 2 3 | Analyses.CopyNumber.Genes.Amplified(format = "json", cohort = "",
gene = "", q = "", page = "1", page_size = "250",
sort_by = "cohort")
|
format |
Format of result. Default value is json. While json,tsv,csv are available. |
cohort |
Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM. |
gene |
Comma separated list of gene name(s). Multiple values are allowed . |
q |
Only return results with Q-value <= given threshold. |
page |
Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1. |
page_size |
Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250. |
sort_by |
Which column in the results should be used for sorting paginated results? Default value is cohort. While q,cohort,gene are available. |
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