View source: R/Metadata.Patients.R
This service returns a list of all TCGA patient barcodes in FireBrowse, optionally filtered by disease cohort. The barcodes are obtained directy from the clinical data.
1 2 | Metadata.Patients(format = "json", cohort = "", page = "1",
page_size = "250", sort_by = "cohort")
|
format |
Format of result. Default value is json. While json,tsv,csv are available. |
cohort |
Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM. |
page |
Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1. |
page_size |
Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250. |
sort_by |
Which column in the results should be used for sorting paginated results? Default value is cohort. While cohort are available. |
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