Analyses.FeatureTable: Retrieve aggregated analysis features table.

In mariodeng/FirebrowseR: An 'API' Client for Broads 'Firehose' Pipeline

Description

This service returns part or all of the so-called <strong>feature table</strong>; which aggregates the most important findings across ALL pipelines in the GDAC Firehose analysis workflow into a single table for simple access. One feature table is created per disease cohort. Results may be filtered by date or cohort, but at least 1 cohort must be specified here. For more details please visit the <a href=https://confluence.broadinstitute.org/display/GDAC/Documentation\#Documentation-FeatureTable>online documentation</a>. Please note that the service is still undergoing experimental evaluation and does not return JSON format.

Usage

Analyses.FeatureTable(format = "tsv", cohort = "", date = "2016_01_28",
  column = "", page = "1", page_size = "250")

Arguments

format	Format of result. Default value is tsv. While tsv,csv are available.
cohort	Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM.
date	Select one or more date stamps. Multiple values are allowed 2016_01_28,2015_08_21,2015_04_02,2014_10_17. Default value is 2016_01_28.
column	Comma separated list of which data columns/fields to return. Multiple values are allowed .
page	Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1.
page_size	Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250.

mariodeng/FirebrowseR documentation built on May 21, 2019, 11:46 a.m.