Analyses.CopyNumber.Genes.Deleted: Retrieve Gistic2 significantly deleted genes results.

In mariodeng/FirebrowseR: An 'API' Client for Broads 'Firehose' Pipeline

Description

This service provides access to the Gistic2 del_genes.conf_99.txt output data. At least 1 gene or cohort must be supplied.

Usage

Analyses.CopyNumber.Genes.Deleted(format = "json", cohort = "", gene = "",
  q = "", page = "1", page_size = "250", sort_by = "cohort")

Arguments

format	Format of result. Default value is json. While json,tsv,csv are available.
cohort	Narrow search to one or more TCGA disease cohorts from the scrollable list. Multiple values are allowed ACC,BLCA,BRCA,CESC,CHOL,COAD,COADREAD,DLBC,ESCA,FPPP,GBM,GBMLGG,HNSC,KICH,KIPAN,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,STES,TGCT,THCA,THYM,UCEC,UCS,UVM.
gene	Comma separated list of gene name(s). Multiple values are allowed .
q	Only return results with Q-value <= given threshold.
page	Which page (slice) of entire results set should be returned. Multiple values are allowed . Default value is 1.
page_size	Number of records per page of results. Max is 2000. Multiple values are allowed . Default value is 250.
sort_by	Which column in the results should be used for sorting paginated results? Default value is cohort. While q,cohort,gene are available.

mariodeng/FirebrowseR documentation built on May 21, 2019, 11:46 a.m.