Man pages for mathesong/kinfitr
Kinetic Modelling of PET Time Activity Curves
| bd_addfit | Add a model fit to a blooddata object |
| bd_addfitpars | Add model fit parameters to a blooddata object |
| bd_addfitted | Add fitted values from another fit to a blooddata object |
| bd_blood_dispcor | Perform Dispersion Correction on a blooddata object |
| bd_create_input | Create an input object from a blooddata object |
| bd_extract | Extract data from blooddata objects |
| bd_getdata | Create an input object from a blooddata object. |
| bd_tidy_times | Tidy time information for blooddata operations |
| bids_create_blooddata | Create a blooddata object from BIDS data |
| bids_filename_attributes | Extract BIDS attributes from filenames and file paths |
| bids_parse_blood | Extract blood data from BIDS study folder |
| bids_parse_files | Extract the filenames from a PET BIDS study |
| bids_parse_study | Parse the contents of a PET BIDS study |
| blmod_exp | Blood Model: Exponential |
| blmod_exp_startpars | Create starting parameters for an exponential blood model |
| blmod_feng | Blood Model: Feng |
| blmod_fengconv | Blood Model: FengConv |
| blmod_fengconv_model | Convolved Feng model for fitting of arterial input functions |
| blmod_fengconvplus | Blood Model: FengConv plus a rise term |
| blmod_fengconvplus_model | Convolved Feng model for fitting of arterial input functions... |
| blmod_feng_model | Feng model for fitting of arterial input functions |
| blmod_feng_startpars | Create starting parameters for an Feng blood model |
| blmod_splines | Blood Model: Splines |
| blmod_tidyinput | Blood Model: Tidy inputs |
| blmod_triexp_model | Tri-exponential model for fitting of arterial input functions |
| blood_dispcor | Perform dispersion correction on blood data collected using... |
| blood_interp | Interpolate Blood Curves |
| blood_smooth | Smooth continuous blood data |
| bloodstream_import_aifpars | Import bloodstream AIF fitted parameters |
| bloodstream_import_inputfunctions | Import bloodstream input functions |
| blood_weights_create | Create Weights for Modelling Whole Blood and AIF Data |
| coef_kinfit | Extract coefficients |
| create_blooddata_bids | Create a blooddata object from BIDS data |
| create_blooddata_components | Create a blooddata object from data vectors |
| decay_correct | Perform Decay Correction of TAC values |
| decay_uncorrect | Reverse Decay Correction of TAC values |
| feng_1tc_tac | Feng input model convolved with a 1TC IRF |
| feng_1tc_tac_model | Model: Feng input model convolved with a 1TC IRF |
| fix_multstartpars | Check and fix multstart parameters |
| frame_cumsum | Cumulative integral over frames |
| frtm | Full Reference Tissue Model |
| frtm_model | Model: Full Reference Tissue Model |
| get_se | Estimate the standard error of parameters using the delta... |
| kinfit_convolve | Convolution Function |
| lin2tcm | Linear Two Tissue Compartment Model |
| lin2tcm_inpshiftProfile | Profile the inpshift using the linearised 2TCM |
| Loganplot | Logan Plot |
| Logan_tstar | Tstar Finder: Logan Plot |
| ma1 | Ichise Multilinear Analysis 1 |
| ma1_tstar | Tstar Finder: Ichise Multilinear Analysis 1 |
| ma2 | Ichise Multilinear Analysis 2 |
| maxpercres | Maximum Percentage Residual |
| metab_exponential | Fit an Exponential Function for Modelling Parent Fraction. |
| metab_exponential_model | Exponential Function Model for Parent Fraction |
| metab_gamma | Fit the Gamma Function for Modelling Parent Fraction. |
| metab_gamma_model | Gamma Function for Parent Fraction |
| metab_hill | Fit a Hill Function to Model Parent Fraction |
| metab_hill_model | Hill Function Model for Parent Fraction |
| metab_invgamma | Fit the Inverted Gamma Function for Modelling Parent... |
| metab_invgamma_model | Inverse Gamma Function Model for Parent Fraction |
| metab_power | Fit a Power Function for Modelling Parent Fraction. |
| metab_power_model | Power Model for Parent Fraction |
| metab_sigmoid | Fit a sigmoid function for Parent Fraction. |
| metab_sigmoid_model | Sigmoid Model for Parent Fraction |
| mlLoganplot | Multilinear Logan Plot |
| mlLogan_tstar | Tstar Finder: Multilinear Logan Plot |
| mrtm1 | Ichise's Multilinear Reference Tissue Model |
| mrtm1_tstar | Tstar Finder: MRTM1 |
| mrtm2 | Ichise's Multilinear Reference Tissue Model 2 |
| mrtm2_tstar | Tstar Finder: MRTM2 |
| oldbids_json | Old BIDS specification JSON Data |
| onetcm | One Tissue Compartment Model |
| onetcm_fitDelay_model | Model: One Tissue Compartment Model with Delay |
| onetcm_model | Model: One Tissue Compartment Model |
| Patlakplot | Patlak Plot |
| Patlak_tstar | Tstar Finder: Patlak Plot |
| pbr28 | PBR28 Test-Retest Data |
| pipe | Pipe operator |
| plot_1tcmfit | Plot: One Tissue Compartment Model |
| plot_2tcm1kfit | Plot: Two Tissue Compartment Model with Irreversible Trapping |
| plot_2tcmfit | Plot: Two Tissue Compartment Model |
| plot_blooddata | Plot a blooddata object |
| plot.blooddata | Plot blood data |
| plot_feng_1tc_tacfit | Plot Feng input model convolved with a 1TC IRF fit |
| plot_frtmfit | Plot: Full Reference Tissue Model |
| plot_inptac_fit | Plot the Timings of the TAC and Arterial Input Function from... |
| plot_inptac_timings | Plot the Timings of the TAC and Arterial Input Function |
| plot_input | Plot input |
| plot.interpblood | Plot interpolated blood |
| plot_kinfit | Plot Kinetic Model Fit: Generic Function |
| plot.kinfit | Plot kinetic model fit |
| plot_lin2tcmfit | Plot: Linear 2TCM |
| plot_Loganfit | Plot: Logan Plot |
| plot_ma1fit | Plot: Ichise Multilinear Analysis 1 |
| plot_ma2fit | Plot: Ichise Multilinear Analysis 2 |
| plot_mlLoganfit | Plot: Multilinear Logan Plot |
| plot_mrtm1fit | Plot: MRTM1 |
| plot_mrtm2fit | Plot: MRTM2 |
| plot_Patlakfit | Plot: Patlak Plot |
| plot_refLoganfit | Plot: Non-Invasive Logan Plot |
| plot_refmlLoganfit | Plot: Non-Invasive Multilinear Logan Plot |
| plot_refPatlakfit | Plot: Patlak Reference Tissue Model |
| plot_residuals | Plot Residuals of a Model |
| plot_SIMEfit | Plot: SIME |
| plot_srtm2fit | Plot: Simplified Reference Tissue Model 2 |
| plot_srtmfit | Plot: Simplified Reference Tissue Model |
| plot_srtm_vfit | Plot: Simplified Reference Tissue Model with Blood Volumes |
| predict_blmod | Predict Blood Model Values: Generic Function |
| predict.blmod | Predict Blood Model Values |
| predict_blood_exp | Predicted values for tri-exponential fits |
| predict_blood_feng | Predicted values for Feng fits |
| predict_blood_fengconv | Predicted values for Fengconv fits |
| predict_blood_fengconvplus | Predicted values for Fengconvplus fits |
| predict_blood_splines | Predicted values for blood splines |
| refLogan | Non-Invasive Logan Plot |
| refLogan_tstar | Tstar Finder: Non-Invasive Logan Plot |
| refmlLogan | Non-Invasive Multilinear Logan Plot |
| refmlLogan_tstar | Tstar Finder: Non-Invasive Multilinear Logan Plot |
| refPatlak | Patlak Reference Tissue Model |
| refPatlak_tstar | Tstar Finder: Patlak Reference Tissue Model |
| shift_timings | Shift timings of TAC and Input |
| shift_timings_df | Shift timings of several TACs and Input |
| SIME | Simultaneous Estimation of Non-Displaceable Binding (SIME) |
| SIME_model | Model: SIME |
| simref | Simulated Reference Tissue Dataset |
| srtm | Simplified Reference Tissue Model |
| srtm2 | Simplified Reference Tissue Model 2 |
| srtm2_model | Model: Simplified Reference Tissue Model 2 |
| srtm_model | Model: Simplified Reference Tissue Model |
| srtm_v | Simplified Reference Tissue Model with Blood Volumes |
| srtm_v_model | Model: Simplified Reference Tissue Model with Blood Volumes |
| SUV | Standardised Uptake Value |
| tidyinput_art | Tidy Up for Models with Arterial Input |
| tidyinput_ref | Tidy Up for Reference Region Methods |
| twotcm | Two Tissue Compartment Model |
| twotcm1k | Two Tissue Compartment Model with Irreversible Trapping |
| twotcm1k_fitDelay_model | Model: Two Tissue Compartment Model with Irreversible... |
| twotcm1k_model | Model: Two Tissue Compartment Model with Irreversible... |
| twotcm_fitDelay_model | Model: Two Tissue Compartment Model with Delay |
| twotcm_irr | Two Tissue Compartment Model with Irreversible Specific... |
| twotcm_macro | Two Tissue Compartment Model with Alternative Macroparameter... |
| twotcm_macro_fitDelay_model | Model: Two Tissue Compartment Model with Delay with a... |
| twotcm_macro_model | Model: Two Tissue Compartment Model with a Macroparameter... |
| twotcm_model | Model: Two Tissue Compartment Model |
| unit_convert | Convert between different units of radioactivity |
| update_blooddata | Update an old blooddata object to the new structure |
| weights_create | Create weights using durations and counts |
| weights_create_bids | Create weights from BIDS data |
