TaxatoASV: Translate Taxa Names to ASV Numbers
In microresearcher/MicroVis: Microbiome Analysis and Visualization
TaxatoASV R Documentation
Translate Taxa Names to ASV Numbers
Description
Translate Taxa Names to ASV Numbers
Usage
TaxatoASV(taxa_data, taxalist, taxa_rank = NULL)
Arguments
taxa_data
Taxonomy data (list object) from a dataset containing
asv-taxonomy reference table.
taxalist
List of taxa names to look up in taxa_data.
taxa_rank
(Optional) The desired rank at which to look up taxa names.
Will default to the active rank if not specified.
Value
List of ASVs corresponding to the taxa in the same order.
microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.
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| TaxatoASV | R Documentation |
Translate Taxa Names to ASV Numbers
Description
Translate Taxa Names to ASV Numbers
Usage
TaxatoASV(taxa_data, taxalist, taxa_rank = NULL)
Arguments
taxa_data |
Taxonomy data (list object) from a dataset containing asv-taxonomy reference table. |
taxalist |
List of taxa names to look up in taxa_data. |
taxa_rank |
(Optional) The desired rank at which to look up taxa names. Will default to the active rank if not specified. |
Value
List of ASVs corresponding to the taxa in the same order.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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