getNetwork: Get the co-occurence network for a dataset

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Get the co-occurence network for a dataset

Description

Get the co-occurence network for a dataset

Usage

getNetwork(
  dataset = NULL,
  factor = NULL,
  rank = NULL,
  fts = NULL,
  method = c("se.mb", "se.glasso"),
  format = c("none", "network", "igraph")
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
factor	(Optional) Factor to split data into groups
rank	Rank of features to analyze. Defaults to the active rank
fts	(Optional) Vector of feature names to analyze. Defaults to all the features in the filtered dataset
method	Co-occurence analysis method
format	(Optional) Format of the network. One of "none", "igraph", or "network"

Value

Co-occurence network for a dataset

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.