listUniques: List features uniquely over/under-expressed in a specified...

In microresearcher/MicroVis: Microbiome Analysis and Visualization

List features uniquely over/under-expressed in a specified group

Description

List features uniquely over/under-expressed in a specified group

Usage

listUniques(
  dataset = NULL,
  factor = NULL,
  groups = NULL,
  rank = NULL,
  alpha = 0.05,
  param = F,
  dataset_name = NULL
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
factor	Factor along which to perform univariate analysis. Defaults to the active factor
groups	Group(s) to identify unique features in. Cycles through all groups by default
rank	Rank at which to analyze features
alpha	Significance threshold. Defaults to 0.05
param	Perform parametrized or nonparametrized univariate analysis? Defaults to FALSE (nonparametrized)
dataset_name	(Not recommended) Name of the dataset to save statistics to. This should not need to be used by users since the function can determine the name of the dataset directly passed to it, but not when it is called within another function.

Value

A grouped list of features unique to each group of a factor in a dataset

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.