listsigs: List Significant Features of a Dataset in Current State

In microresearcher/MicroVis: Microbiome Analysis and Visualization

List Significant Features of a Dataset in Current State

Description

List Significant Features of a Dataset in Current State

Usage

listsigs(
  dataset = NULL,
  factor = NULL,
  ranks = NULL,
  allRanks = F,
  alpha = 0.05,
  silent = F,
  dataset_name = NULL
)

Arguments

dataset	(Optional) MicroVis dataset (mvdata object). If not specified, defaults to active dataset.
factor	(Optional) Factor along which to perform statistical analysis. Default is the active factor of the dataset
ranks	(Optional) Ranks at which to get the significant features. Default is the active rank of the dataset
allRanks	If set to TRUE, will get significant features at all ranks of the dataset
alpha	(Optional) Significance threshold. Defaults to 0.05
silent	If set to TRUE, output text will not be printed
dataset_name	(Optional) Name of the dataset being passed so that results can be saved to that dataset

Value

List of significant features.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.