loadTaxaFile: Load Taxonomy File
In microresearcher/MicroVis: Microbiome Analysis and Visualization
loadTaxaFile R Documentation
Load Taxonomy File
Description
Load Taxonomy File
Usage
loadTaxaFile(path_to_taxa = NA, metadata = NULL, combineDupes = T)
Arguments
path_to_taxa
(Optional) full path to taxonomy csv file
metadata
Metadata dataframe
combineDupes
If set to TRUE (default), MicroVis will try to combine
duplicate features.
Value
Loaded taxonomy data - a list of:
1) orig: A sample-by-ASV (rows-by-columns) original abundance dataframe
that will not be processed.
2) A temporary copy of orig that will be used in downstream processing
3) An ASV-by-rank dataframe with ASVs and their assigned taxa at each
taxonomic rank
microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.
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| loadTaxaFile | R Documentation |
Load Taxonomy File
Description
Load Taxonomy File
Usage
loadTaxaFile(path_to_taxa = NA, metadata = NULL, combineDupes = T)
Arguments
path_to_taxa |
(Optional) full path to taxonomy csv file |
metadata |
Metadata dataframe |
combineDupes |
If set to TRUE (default), MicroVis will try to combine duplicate features. |
Value
Loaded taxonomy data - a list of: 1) orig: A sample-by-ASV (rows-by-columns) original abundance dataframe that will not be processed. 2) A temporary copy of orig that will be used in downstream processing 3) An ASV-by-rank dataframe with ASVs and their assigned taxa at each taxonomic rank
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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