mvNetwork: Construct an association network between features

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Construct an association network between features

Description

Construct an association network between features

Usage

mvNetwork(
  dataset = NULL,
  factor = NULL,
  rank = NULL,
  fts = NULL,
  method = c("se.mb", "se.glasso")
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
factor	(Optional) Factor to split data into groups
rank	Rank of features to analyze. Defaults to the active rank
fts	(Optional) Vector of feature names to analyze. Defaults to all the features in the filtered dataset
method	Co-occurence analysis method

Value

MicroVis dataset with network coefficients attached

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.