mvdeseq: DESeq2 Analysis

In microresearcher/MicroVis: Microbiome Analysis and Visualization

DESeq2 Analysis

Description

DESeq2 Analysis

Usage

mvdeseq(
  dataset = NULL,
  factor = NULL,
  rank = NULL,
  compareAll = F,
  dataset_name = NULL
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
factor	Factor along which to perform analysis. Defaults to active factor
rank	Rank at which to select features to analyze. Defaults to active rank
compareAll	Perform pairwise comparisons between all groups or just between a reference group and all other groups? Defaults to FALSE (compares a reference group to all other groups)
dataset_name	(Not recommended) Name of the dataset to save results to. This should not need to be used by users since the function can determine the name of the dataset directly passed to it, but not when it is called within another function.

Value

Deseq analysis results

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.