mvload: MicroVis Data Loading

In microresearcher/MicroVis: Microbiome Analysis and Visualization

MicroVis Data Loading

Description

Initial function for loading taxonomy and/or pathway data with associated metadata into MicroVis

Usage

mvload(
  path_to_folder = NULL,
  path_to_metadata = NA,
  path_to_taxa = NA,
  path_to_fxnl = NA,
  autoProcess = T,
  combineDupes = T,
  combineDataSets = F
)

Arguments

path_to_folder	(Optional) full path to directory containing csv files
path_to_metadata	(Optional) Path to metadata csv file
path_to_taxa	(Optional) Path to taxonomy abundance csv file
path_to_fxnl	(Optional) Path to functional abundance csv file
autoProcess	If set to TRUE (default), MicroVis will automatically process datasets using default normalization and filtering parameters. Datasets can still be re-processed by the user afterwards.
combineDupes	If set to TRUE (default), MicroVis will try to combine duplicate features.
combineDataSets	If set to TRUE, MicroVis will ask for a second set of data and combine both datasets into one.

Value

List of successfully loaded datasets with/without processing.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.