mvmerge: Merge Two Datasets with Overlapping Samples

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Merge Two Datasets with Overlapping Samples

Description

Merge Two Datasets with Overlapping Samples

Usage

mvmerge(
  dataset1,
  dataset2,
  dataset1_name = NULL,
  dataset2_name = NULL,
  features1 = NULL,
  features2 = NULL,
  keepFiltered = F,
  sigsOnly1 = F,
  sigsOnly2 = F,
  alpha = 0.05
)

Arguments

dataset1	First MicroVis dataset
dataset2	Second MicroVis dataset
dataset1_name	(Optional) What to name the first dataset.
dataset2_name	(Optional) What to name the second dataset.
features1	(Optional) Features to choose from first dataset.
features2	(Optional) Features to choose from second dataset.
keepFiltered	Whether or not to keep the filtered-out taxa that are lumped into the "Other" feature by runFeatureFilter().
sigsOnly1	Whether or not to only consider the significant features of the first dataset. Default is FALSE.
sigsOnly2	Whether or not to only consider the significant features of the second dataset. Default is FALSE.
alpha	Significance threshold. Default is 0.05.

Value

Merged dataset with the samples that were shared across both datasets and all the features selected from both datasets.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.