plotFtCorlines: Plot correlation trendlines between different features

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Plot correlation trendlines between different features

Description

Plot correlation trendlines between different features

Usage

plotFtCorlines(
  dataset1 = NULL,
  dataset2 = NULL,
  method = c("pearson", "kendall", "spearman"),
  factor = NULL,
  features1 = NULL,
  features2 = NULL,
  sigsOnly = T,
  alpha = 0.05,
  r_cutoff = 0.5
)

Arguments

dataset1	MicroVis dataset. Defaults to the active dataset
dataset2	(Optional) MicroVis dataset with features to correlate with the dataset1
method	Correlation method. One of either "pearson", "spearman", or "kendall". Defaults to "spearman"
factor	Factor to group samples by
features1	(Optional) Specific features to consider from first dataset. If only one dataset is being used, then these features will be correlated with themselves
features2	(Optional) Specific features to consider from second dataset, If no second dataset is provided, then 'features1' will be correlated with 'features2' from 'dataset1'
sigsOnly	Only plot significant correlations (after adjusting for multiple comparisons)? Defaults to TRUE
alpha	Significance threshold. Defaults to 0.05
r_cutoff	Correlation coefficient threshold. Defaults to 0 (all correlation values will be accepted when choosing which correlations to plot)

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.