plotHeatTree: Plot Heat Tree

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Plot Heat Tree

Description

Plot Heat Tree

Usage

plotHeatTree(
  dataset = NULL,
  test = "univar",
  ftlist = NULL,
  showAll = F,
  color_limit = 2,
  alpha = 0.05,
  sigsOnly = T,
  initial_layout = "fruchterman-reingold",
  layout = "reingold-tilford"
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
test	Type of statistical test to use. One of either "univar" or "deseq". Defaults to univariate
ftlist	(Optional) List of specific features to show
showAll	Show all features? Defaults to FALSE
color_limit	Any log2FC values with absolute value above this will be treated as if they are at this value for coloring
alpha	Significance threshold. Defaults to 0.05
sigsOnly	Whether to only plot the significant features. Deafults to TRUE.
initial_layout	Initial layout for the tree
layout	Type of tree layout

Value

MicroVis dataset

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.