readdepth: Get read depth summary statistics for each group or for all...

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Get read depth summary statistics for each group or for all samples

Description

Get read depth summary statistics for each group or for all samples

Usage

readdepth(dataset = NULL, factor = NULL, individual = F, all = F)

Arguments

dataset	(Optional) MicroVis dataset (mvdata object). If not specified, defaults to active dataset.
factor	(Optional) Factor along which samples will be grouped
individual	(Optional) Whether to return read depths for each individual sample. Defaults to FALSE
all	(Optional) Whether to calculate read depth statistics for all the samples as one group

Value

Dataframe of read depth statistics including min, max, median, and mean

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.