scaleFeatures: Scale Features

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Scale Features

Description

Scale Features

Usage

scaleFeatures(
  dataset = NULL,
  temp = F,
  scaling = c("sum", "median", "range", "centered", "standardized", "relative", "none"),
  sum_scale = 1e+06,
  silent = F
)

Arguments

dataset	MicroVis dataset (mvdata object)
temp	If set to TRUE, it tells processDataset() to NOT update the active dataset.
scaling	Method for scaling features. Choices are "sum", "none", "relative", "median", "range", "centered", and "standardized". Default is "sum".
sum_scale	Number of reads to scale each feature to. Default is 1 million.
silent	Argument that is ultimately passed onto runSampleFilter(), runNormalization(), and runFeatureFilter(), telling them not to output any messages.

Value

Microvis dataset (mvdata object) with features scaled.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.