scaleSamples: Scale Samples

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Scale Samples

Description

Scale Samples

Usage

scaleSamples(
  dataset = NULL,
  temp = F,
  scaling = "sum",
  sum_scale = 1e+06,
  silent = F
)

Arguments

dataset	MicroVis dataset (mvdata object)
temp	If set to TRUE, it tells processDataset() to NOT update the active dataset.
scaling	Method for scaling samples. Choices are "sum", "none", "relative", "median", "range", "centered", and "standardized". Default is "sum".
sum_scale	Number of reads to scale each sample to. Default is 1 million.
silent	Argument that is ultimately passed onto runSampleFilter(), runNormalization(), and runFeatureFilter(), telling them not to output any messages.

Value

Microvis dataset (mvdata object) with samples scaled.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.