sliceCormats: Select only significant and/or high-correlation values from...

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Select only significant and/or high-correlation values from correlation matrices

Description

Select only significant and/or high-correlation values from correlation matrices

Usage

sliceCormats(
  cormats,
  sigsOnly = T,
  alpha = 0.05,
  adjustp = T,
  r_cutoff = 0,
  matchFts = F
)

Arguments

cormats	List of correlation matrices (output of ftcor)
sigsOnly	Select only significant correlations? Defaults to TRUE
alpha	Significance threshold. Defaults to 0.05
adjustp	Use the adjusted p-values? Defaults to TRUE
r_cutoff	Only select correlations with an absolute R-value above a certain threshold? This value must be between -1 and 1. Defaults to 0
matchFts	Show the same features in the correlation matrices for all groups? This can be helpful when comparing correlations between groups. Defaults to FALSE

Value

List of correlation matrices with only the desired correlations remaining

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.