sparcc: Sparcc wrapper

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Sparcc wrapper

Description

A reimplementation of SparCC algorithm (Friedman et Alm 2012, PLoS Comp Bio, 2012).

Usage

sparcc(data, iter = 20, inner_iter = 10, th = 0.1)

Arguments

data	Community count data matrix
iter	Number of iterations in the outer loop
inner_iter	Number of iterations in the inner loop
th	absolute value of correlations below this threshold are considered zero by the inner SparCC loop.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.