summarizeTaxa: Get mean and SE of features

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Get mean and SE of features

Description

Get mean and SE of features

Usage

summarizeTaxa(
  dataset = NULL,
  factor = NULL,
  ranks = NULL,
  allRanks = F,
  meansOnly = F,
  pivoted = T
)

Arguments

dataset	MicroVis dataset. Defaults to active dataset
factor	Factor along which to conduct beta-diversity analysis
ranks	Ranks at which to summarize features
allRanks	If set to TRUE, will summarize features at all ranks. Defaults to FALSE
meansOnly	Only return the means and not SE
pivoted	If set to TRUE, the returned table will have each group of the factor in its own column

Value

Table with the means +/- SE for features in each group of the dataset

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.