zerostoggle: Switch Method for Replacing Zeros

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Switch Method for Replacing Zeros

Description

Cycles between two options for dealing with zero counts: - replace: Replacing zero counts with a value between 1/100 and 1/10 of the minimum count value - impute: Use zCompositions package to impute a distribution of values to replace zeros

Usage

zerostoggle(
  method = c("replace", "impute"),
  div = NULL,
  rdist = c("runif", "point")
)

Arguments

method	(Optional) The method of zero-replacement to switch to
div	(Optional) The divisor by which to divide the lowest count value by
rdist	(Optional) How to replace zeros, either using a uniform distribution or a point value to determine the maximum value to replace zeros with for the "replace" method

Value

Does not return anything

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.