LRRtoCNA.mm: LRRtoCNA.mm

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

LRRtoCNA.mm

Description

MethylMaster version of the Epicopy LRRtoCNA function Epicopy convert log r ratio data to cna calls: Similar to Lucas Salas' PhD modified LRRtoCNA2 function

Usage

LRRtoCNA.mm(
  LRR,
  sampID = NULL,
  ncores = 1L,
  seg.undo.splits = "sdundo",
  seg.undo.SD = 2,
  epic.manifest.path = getwd(),
  platform = c("hm450", "EPIC"),
  ...
)

Arguments

LRR	The LRR parameter
sampID	The sampID parameter
ncores	The ncores parameter, note that multiple cores may not work on every system
seg.undo.splits	The seg.undo.splits parameter
seg.undo.SD	The seg.undo.SD parameter
epic.manifest.path	The epic.manifest.path parameter
platform	The platform parameter

Value

Returns CNA segments

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.