methyl_master_formatting_hm450: methyl_master_formatting_hm450

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

methyl_master_formatting_hm450

Description

Formatting the hm450 output to prepare for plotting etc.

Usage

methyl_master_formatting_hm450(
  hm450.form.seg = NULL,
  hm450.form.output.dir = getwd(),
  hm450.form.sample.sheet.path = NULL,
  hm450.form.thresholds = NULL,
  hm450.form.workflow = "B",
  hm450.form.comparison = NULL,
  hm450.form.save.seg = FALSE,
  ...
)

Arguments

hm450.form.seg	The hm450 routine seg results as input to be formatted
hm450.form.output.dir	The output dir for the formatting results
hm450.form.sample.sheet.path	The MehtylMaster sample sheet path
hm450.form.thresholds	The thresholds used to determine the CNV state, if NULL, the equation seg.state <- round(2^seg.means * 2) is used
hm450.form.workflow	The specific HM450 workflow that was used
hm450.form.comparison	The MethylMaster two-element comparison vector
hm450.form.save.seg	Whether to save the formatted HM450 results
...	Additional parameters passed to methyl_master_formatting_hm450

Value

#Formatted seg list object for overlaps and visualizing

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.