methyl_master_prepare_sample_sheet: methyl_master_prepare_sample_sheet

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

methyl_master_prepare_sample_sheet

Description

compare results from different routine outputs For example, create a MethylMaster style sample sheet from selected 3p-del (positive control) KIRC samples from the firehose collection on CBioPortal

Usage

methyl_master_prepare_sample_sheet(
  prep.output.path.name = NULL,
  prep.file.sep = NULL,
  prep.idat.dir = NULL,
  prep.sample.sheet = NULL,
  prep.primary.samples = NULL,
  prep.sample.group = NULL,
  prep.platform = NULL,
  prep.batch = 1
)

Arguments

prep.output.path.name	The output file destination
prep.file.sep	The file separator to use
prep.idat.dir	The .idat file directory
prep.sample.sheet	The sample sheet to use
prep.primary.samples	The specified primary sample IDs
prep.sample.group	The specified sample groups
prep.platform	The platform
prep.batch	the batch variable

Value

A sample sheet for use with MethylMaster

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.